GgaEX1050036 @ galGal4
Exon Skipping
Gene
ENSGALG00000001039 | RPL35
Description
60S ribosomal protein L35 [Source:RefSeq peptide;Acc:NP_989604]
Coordinates
chr17:9525286-9526714:-
Coord C1 exon
chr17:9526617-9526714
Coord A exon
chr17:9526346-9526427
Coord C2 exon
chr17:9525286-9525870
Length
82 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTTCATCCTTCGCAGCCG
3' ss Score
9.8
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
NAGGAGCTGCTGAAGCAGCTGGACGACCTCAAGGTGGAGCTGTCACAGCTGCGCGTGGCAAAGGTGACGGGCGGGGCCGCCTCCAAGCTGTCCAAAAT
Seq A exon
CCGCGTGGTGCGTAAGTCCATTGCCCGAGTCCTGACCGTGATCAACCAGACTCAGAAGGAGAACCTGCGGAAGTTCTACAAA
Seq C2 exon
GGCAAAAAGTATAAGCCTCTCGATCTGCGGCCGAAGAAGACTCGTGCCATGCGGCGCAGGTTAAATAAACATGAAGAAAACCTGAAGACCAAAAAACAGCAGCGAAAAGAACGTCTGTACCCTGTCCGGAAATATGCCATCAAGGCATAAGAGTGCAGTGTACCAGAAGTTCTTAACTACACTGGCTGGGTATGTGTCATTAAATAGAACTTTGTTTGGAAGGTGTCAGTGGTGTTCTCTTGAATAGCAGTGAGACAAAGGTGTCATCAGCTTCATGGAGAGAAACAGGGTTCACAGAGTGCCTGCTTGAGCTTTTACTGTTAATGGATTTACTAGCATAATTTGCAGCTTAAGATGATTTTTTTCTCTGCGAAGAGCGAACAAATAAATATAGATCTGTGAACCCGGTTCAGCTTAACATGTAAGGCAAAAAAATGTAATTTGAGGTTCACTTAAAATCAAAACTGCACAGTTTACAGTAAGCTGGTATTCAGCGCTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001039-'1-2,'1-0,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.036 C2=0.612
Domain overlap (PFAM):
C1:
PF0083118=Ribosomal_L29=PU(64.0=97.0)
A:
PF0083118=Ribosomal_L29=PD(34.0=60.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTCCAAGCTGTCCAAAAT
R:
ACACTGCACTCTTATGCCTTGA
Band lengths:
182-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]