GgaEX1050036 @ galGal3
Exon Skipping
Gene
ENSGALG00000001039 | RL35_CHICK
Description
NA
Coordinates
chr17:10244348-10245851:-
Coord C1 exon
chr17:10245700-10245851
Coord A exon
chr17:10245429-10245510
Coord C2 exon
chr17:10244348-10244953
Length
82 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTTCATCCTTCGCAGCCG
3' ss Score
9.8
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GTCCGCCGCCCGCAGGCCAAGATCAAGGCCCGAGACCTGCGGGGGAAAAAGAAGGAGGAGCTGCTGAAGCAGCTGGACGACCTCAAGGTGGAGCTGTCACAGCTGCGCGTGGCAAAGGTGACGGGCGGGGCCGCCTCCAAGCTGTCCAAAAT
Seq A exon
CCGCGTGGTGCGTAAGTCCATTGCCCGAGTCCTGACCGTGATCAACCAGACTCAGAAGGAGAACCTGCGGAAGTTCTACAAA
Seq C2 exon
GGCAAAAAGTATAAGCCTCTCGATCTGCGGCCGAAGAAGACTCGTGCCATGCGGCGCAGGTTAAATAAACATGAAGAAAACCTGAAGACCAAAAAACAGCAGCGAAAAGAACGTCTGTACCCTGTCCGGAAATATGCCATCAAGGCATAAGAGTGCAGTGTACCAGAAGTTCTTAACTACACTGGCTGGGTATGTGTCATTAAATAGAACTTTGTTTGGAAGGTGTCAGTGGTGTTCTCTTGAATAGCAGTGAGACAAAGGTGTCATCAGCTTCATGGAGAGAAACAGGGTTCACAGAGTGCCTGCTTGAGCTTTTACTGTTAATGGATTTACTAGCATAATTTGCAGCTTAAGATGATTTTTTTCTCTGCGAAGAGCGAACAAATAAATATAGATCTGTGAACCCGGTTCAGCTTAACATGTAAGGCAAAAAAATGTAATTTGAGGTTCACTTAAAATCAAAACTGCACAGTTTACAGTAAGCTGGTATTCAGCGCTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001039-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.231 A=0.036 C2=0.684
Domain overlap (PFAM):
C1:
PF0083118=Ribosomal_L29=PU(69.5=89.1)
A:
PF0083118=Ribosomal_L29=PD(28.8=60.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGGGGGAAAAAGAAGGAG
R:
CATGGCACGAGTCTTCTTCGG
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]