MmuEX6100986 @ mm10
Exon Skipping
Gene
ENSMUSG00000062997 | Rpl35
Description
ribosomal protein L35 [Source:MGI Symbol;Acc:MGI:1913739]
Coordinates
chr2:39001580-39004868:-
Coord C1 exon
chr2:39004732-39004868
Coord A exon
chr2:39004107-39004188
Coord C2 exon
chr2:39001580-39001765
Length
82 bp
Sequences
Splice sites
3' ss Seq
ACTGCCATCTATTTTTATAGACG
3' ss Score
7.41
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCCAAGATTAAGGCTCGGGACCTGCGCGGCAAGAAGAAGGAGGAGCTGTTGAAACAACTGGACGATCTGAAGGTGGAATTGTCCCAGCTTCGGGTCGCCAAAGTGACAGGCGGCGCCGCGTCCAAGCTCTCCAAGAT
Seq A exon
ACGAGTCGTTCGCAAGTCTATCGCCCGAGTCCTCACTGTTATTAACCAGACTCAAAAAGAAAACCTCAGGAAATTCTACAAG
Seq C2 exon
GGCAAGAAATACAAGCCCCTAGACCTGCGACCCAAGAAGACTAGAGCCATGCGCCGCCGGCTCACCAAGCACGAGGAGAAGCTGAAGACCAAGAAGCAGCAGCGGAAGGAGCGGCTGTATCCTCTGCGCAAGTATGCAGTCAAGGCCTGAGATGACAACGACAATAAAGTGCGAGACTGACTGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062997-'5-8,'5-7,6-8=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=0.036 C2=0.633
Domain overlap (PFAM):
C1:
PF0083118=Ribosomal_L29=PU(69.5=89.1)
A:
PF0083118=Ribosomal_L29=PD(28.8=60.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGACGATCTGAAGGTGGA
R:
GTCTTCAGCTTCTCCTCGTGC
Band lengths:
170-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types