MmuALTD1033471-2/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000062997 | Rpl35
Description
ribosomal protein L35 [Source:MGI Symbol;Acc:MGI:1913739]
Coordinates
chr2:39001580-39003115:-
Coord C1 exon
chr2:39003057-39003115
Coord A exon
chr2:39003053-39003056
Coord C2 exon
chr2:39001580-39001765
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
CCCTGTCATTTCTGTCCCAGGGC
3' ss Score
9.84
Exon sequences
Seq C1 exon
CTCATGTGGCTGGAGGTGGAGGCTCTTTATTTAGGTGGTGCTTGGGATTAAGCCATGAG
Seq A exon
GCAA
Seq C2 exon
GGCAAGAAATACAAGCCCCTAGACCTGCGACCCAAGAAGACTAGAGCCATGCGCCGCCGGCTCACCAAGCACGAGGAGAAGCTGAAGACCAAGAAGCAGCAGCGGAAGGAGCGGCTGTATCCTCTGCGCAAGTATGCAGTCAAGGCCTGAGATGACAACGACAATAAAGTGCGAGACTGACTGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062997-7-13,8-13,9-13,10-13-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.633
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAGGTGGAGGCTCTTTA
R:
TAGTCTTCTTGGGTCGCAGGT
Band lengths:
94-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types