MmuINT0161941 @ mm9
Intron Retention
Gene
ENSMUSG00000026963 | Tmem210
Description
transmembrane protein 210 [Source:MGI Symbol;Acc:MGI:1925467]
Coordinates
chr2:25144285-25144707:+
Coord C1 exon
chr2:25144285-25144314
Coord A exon
chr2:25144315-25144475
Coord C2 exon
chr2:25144476-25144707
Length
161 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TGATGTAGCTCATCATGCAGGTT
3' ss Score
2.61
Exon sequences
Seq C1 exon
TGACACGTGCCCTGGACACTCGGAAAACAG
Seq A exon
GTAAGTGTGTCAGAGGAAGTCTTAAGGGTGAGCTGTGTCCTCTCTCTGCCCCCTTCTGGAAGTGCAGCTCACAGTTGGATTGAGAGCAATGTCCTCAAGGGCTGGCTTCCCCTGGGTGGCCAAGGTCTTGTTGGATCATGCTGATGTAGCTCATCATGCAG
Seq C2 exon
GTTGGTGGGGCCCTACGGAGTCCAGGAAGATCGCATAGACCTGCACACGGTACATGTGGAGTCCCACCTCATGGACCCTGATCTGGACGTATCCATGATGCCGTCCTTGGATGGCCCAGGCCTCATGACCATGACTGCTCCTCTAGAGCCACCTCCACCCCCTCCTCCTCCTCCCCCACTTCCACAGTAGTGGAGAGCAACTAGGGTGGAGAATTAAACAGTATTTAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026963-Tmem210:NM_030055:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.413
Domain overlap (PFAM):
C1:
PF151951=TMEM210=FE(8.6=100)
A:
NA
C2:
PF151951=TMEM210=PD(53.4=96.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACACGTGCCCTGGACA
R:
TCTCCACCCTAGTTGCTCTCC
Band lengths:
242-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: