HsaINT1048204 @ hg38
Intron Retention
Gene
ENSG00000185863 | TMEM210
Description
transmembrane protein 210 [Source:HGNC Symbol;Acc:HGNC:34059]
Coordinates
chr9:137170928-137171443:-
Coord C1 exon
chr9:137171414-137171443
Coord A exon
chr9:137171165-137171413
Coord C2 exon
chr9:137170928-137171164
Length
249 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGACCCGGCCCGTCATGCAGGTT
3' ss Score
7.37
Exon sequences
Seq C1 exon
TGAAACATGCCCGAGACAAGTGGACAACAG
Seq A exon
GTGAGCACCAGGGAGGCCCTCGAGGGAGGCACGCTGTCTCAGGGGAGGCCCTTGGCGGGGGGAGCTATCCCAGGGGAGTCCCTGGAGGAGGAGGGGTGCTGTCCCTGGAGGAGGAGGGGTGCTGTCCCTGGAAGAGGAGGTGTGCTGTCCCAAGGGAGGCCCTTTGTGGGGGTGCACTGTCCCAGACGCCAGCCTGTCCTGGGGGAACAAGGACTCTACCAGCTCGTGATGACCCGGCCCGTCATGCAG
Seq C2 exon
GTTGGTGGAGAATTTTGGGGTCCAGGAAGATCTCATGGACCTGCACCCGGTTTACGTGGAGTCCCAGCTAATGGACGCTGACCTGGAGGTCTCCCTGGTGCCACCACTAGAGGATCAGAGCCTTGTGGCCATCCCCATGGAGGCTTCTTCAGAGGAGCCGCCACCACCCCCGCCCCTACCACCTGAGTAGAGGGCTGAGGGCAGCTGGGGGAGGGGAATTAAAGCGTATTTAGTGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185863:ENST00000413619:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.302
Domain overlap (PFAM):
C1:
PF151951=TMEM210=FE(8.6=100)
A:
NA
C2:
PF151951=TMEM210=PD(53.4=96.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAACATGCCCGAGACAAGT
R:
AATACGCTTTAATTCCCCTCCCC
Band lengths:
260-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains