GgaINT0125255 @ galGal3
Intron Retention
Gene
ENSGALG00000008899 | LRRC26
Description
NA
Coordinates
chr17:1390790-1392271:+
Coord C1 exon
chr17:1390790-1391333
Coord A exon
chr17:1391334-1392065
Coord C2 exon
chr17:1392066-1392271
Length
732 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CCACCACTTCTCTCTTCCAGAGA
3' ss Score
10.01
Exon sequences
Seq C1 exon
ATGGGCAGATGGAGGGGTCCCAGCATCCTGCTGGCCGTACTGCTCCTCCTGCGCCCGCTGCCCGCTCCAGCGTGTCCCCATACCTGCCACTGCTGGGCAGGGGACGTGGACTGCCGCCAGCGTGCCCTGCACGAGGTGCCGCCGCTCCTGCCCACCAATGCCAGCACCCTCTGGCTCGGCTACAACCTCATCGCCGTGCTCGGGGCCCGTGCTTTCCCCTCCCTGCCGGTGCTGCTGCGGCTCAGCCTCCCCCATAACCGCTTGGAGAAGATCCACAGGCAGGCGCTGCTGGGGCTCAGGGAGCTGCAGGAGCTGGACCTCAGTGACAACTACCTGTCTGTGCTGAACCCCGAGACCTTCCTGCCTCTCACCAGCCTGTCTATGCTCAACTTAGGCTACAACAGGCTGGAGGAGCTGGAGGCGGGGGTGCTGCATGCCTTGCCCCAGCTCCAAGCGATCTTCCTGAATGGAAATCCCTGGATGTGCTCCTGCAGCATCCTGCCCCTCTGGCACTGGCTGGGACACAACAGGGAGAAAGTGCCAG
Seq A exon
GTGAGTGCCCAGGGGAATGTGTCCCCACACCCCCACCTGCTTCATTCTCACTGGCCTCCTCCATCAGCTGCCAGGCTGTGGGTGCGGGGTTTGGGGTTTCTGGGGGTGCTGCAAGGTTCCTATGAGCCAGCCCCATTAGGGTGGATTTGTCCTCAGATCTGGTTCCTGGTGGCTGCTTGTTGGTCACCAGCAGGGACTGCCCAGACTGGTGGAGTGGGCATTGGCACCCAGCACTGTTCCCTGCAGTCCTGCCAGAGGGAGGGCAAGGATGGGCAATGGGCACCTGTGGGGTGTGTGTCACACTTGGCTTGATCAAGGCTCAATGCCTTCAGCCTCTTCCCTATTCCTTTCATGAGTGTGGGTCTGATCTGCTGGTGAGGTCTCTCCTCCCTCTCCTTCCCATCCACCTCCACTGGTGGGGATTTCTGTGCCATTTCCAGACTGCCTCCTCACTGCTGCCCCCAGGGAGCCATTCCCCACCCTGCGTGACCCCTCCTGCCCTGGTCTGTGCCCACCTCCCCATCGCATCACACTCCCCAGGCTATAGGACACAGATGAGTGTGGGACCCTCCCCGCTTCCTTTCTTTGAGCCCTGCTCTGTGCCACTTTGATCAGCTCAGCTCTGCAGTTCATCCTCCTGCCCTGGTCCCCTGTGTCCTACGCAGCCCTACTGTCCCACCTGCCTTGTCCTGGAAGCCTCGTGTGCCCACCACCACCACTTCTCTCTTCCAG
Seq C2 exon
AGAGGAGTTCTCTCCAGTGCGTCTTCCCAGAGTCGCTGAACACATACCCGATCACGGCCTTTGGGAACGATTCCTTCCAGCAGTGTCAGAAGGTCCCGCTGTCAGCCCAGCACTACGCTGCCTTCCTGCTCATCGGGCCCTTCTCCTTCCTGGCCAGCATCTTCTGCTGTACCTTGATAGGCTTCATCGTGGTCATTTACCAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008899:ENSGALT00000014472:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0146213=LRRNT=WD(100=15.4),PF095025=HrpB4=WD(100=52.2),PF138551=LRR_8=WD(100=33.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCAGCCTGTCTATGCTCA
R:
CAGAAGATGCTGGCCAGGAAG
Band lengths:
343-1075
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]