HsaINT0096754 @ hg19
Intron Retention
Gene
ENSG00000184709 | LRRC26
Description
leucine rich repeat containing 26 [Source:HGNC Symbol;Acc:31409]
Coordinates
chr9:140063212-140064491:-
Coord C1 exon
chr9:140063723-140064491
Coord A exon
chr9:140063638-140063722
Coord C2 exon
chr9:140063212-140063637
Length
85 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCTTTGTCTGTGTCCCACAGAGG
3' ss Score
10.24
Exon sequences
Seq C1 exon
GGCGCCGCAGGAACGGGCTCCGCGGACGACGGGCTCCAGGGACGCACAGGCAGCGGGCCTCCCACCGCGGGTGCCGGGGGCGGGGGGGCTGCCCCCATGCGGGGCCCTTCCTGGTCGCGGCCTCGGCCGCTGCTGCTGCTGTTGCTGCTGCTGTCGCCTTGGCCTGTCTGGGCCCAGGTGTCGGCCACGGCCTCGCCCTCGGGGTCCCTGGGCGCCCCGGACTGCCCCGAGGTGTGCACGTGCGTGCCGGGAGGCCTGGCCAGCTGCTCGGCACTCTCGCTGCCCGCCGTGCCCCCGGGCCTGAGCCTGCGCCTGCGCGCGCTGCTGCTGGACCACAACCGCGTCCGTGCGCTGCCGCCAGGTGCCTTCGCGGGAGCGGGCGCGCTACAGCGCCTGGACCTGCGCGAGAACGGGCTGCACTCGGTGCATGTGCGAGCCTTCTGGGGCCTGGGCGCGCTGCAGCTGCTGGACCTGAGCGCCAACCAGCTGGAAGCACTGGCACCAGGGACTTTCGCGCCGCTGCGCGCGCTGCGCAACCTCTCATTGGCCGGCAACCGGCTGGCGCGCCTGGAGCCCGCGGCGCTAGGCGCGCTCCCGCTGCTGCGCTCACTCAGCCTGCAGGACAACGAGCTGGCGGCACTCGCGCCGGGGCTGCTGGGCCGCCTGCCCGCTCTAGACGCGCTGCACCTGCGCGGCAACCCTTGGGGCTGCGGGTGCGCGCTGCGCCCGCTCTGCGCCTGGCTGCGCCGGCACCCGCTGCCCGCGTCAG
Seq A exon
GTGAGCTGCTGGGGACGCGGGTCGGGGTCTGCAGGGCGGTGCGGCAGCCGCCACCTGACGCCGCGCCTTTGTCTGTGTCCCACAG
Seq C2 exon
AGGCCGAGACGGTGCTCTGCGTGTGGCCGGGACGCCTGACGCTCAGCCCCCTGACTGCCTTTTCCGACGCCGCCTTTAGCCATTGCGCGCAGCCGCTCGCCCTGCGGGACCTGGCCGTGGTTTACACGCTCGGGCCGGCCTCCTTCCTCGTCAGCCTGGCTTCCTGCCTGGCGCTGGGCTCTGGGCTCACCGCCTGCCGTGCGCGCCGCCGCCGCCTCCGCACCGCCGCCCTCCGCCCGCCGAGACCGCCAGACCCGAACCCCGATCCCGACCCCCACGGCTGTGCCTCGCCCGCGGACCCGGGGAGCCCCGCCGCTGCCGCCCAAGCCTGAGCGGCCGCGGCCGCCTGGAGCGCTCGAAGCTTCCCCCATGCCTTTGCCCTCCCTTTACACTGTCTGCCGGCGTCAACAAGCGACACAGACCGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184709-LRRC26:NM_001013653:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=NA C2=0.336
Domain overlap (PFAM):
C1:
PF138551=LRR_8=WD(100=26.7),PF138551=LRR_8=WD(100=26.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTAGACGCGCTGCACCT
R:
GTCGGAAAAGGCAGTCAGGG
Band lengths:
167-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)