MmuINT0092940 @ mm9
Intron Retention
Gene
ENSMUSG00000026961 | Lrrc26
Description
leucine rich repeat containing 26 [Source:MGI Symbol;Acc:MGI:2385129]
Coordinates
chr2:25145431-25146713:+
Coord C1 exon
chr2:25145431-25146181
Coord A exon
chr2:25146182-25146257
Coord C2 exon
chr2:25146258-25146713
Length
76 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GCCGCTCCTGTGTCCCGCAGAAA
3' ss Score
10.57
Exon sequences
Seq C1 exon
GGGCAGGAGAGTTAATACTTGTGCAGGTGAGGCTGAGACGGCTTTGGGGCACCTTGACTCCAAAGCCCGAAGCCGCACATGCGGGGTTCTTTTTTCTCGCGGCTTCCGCCGCAACTCTCTCTGCTGCTGCTGCTGTCGTTGAGGCGAGTCTGGACCCAGGAGGATATTGGAACTGCCCCTTCTAAATCCCCGGTGGCCCCCGAATGCCCCGAGGCATGTTCATGTTCACTAGGCGGCAAGGCCAATTGCTCCGCACTCGCGCTGCCTGCGGTACCAGCGGACCTGAGCTGGCAAGTACGCTCACTGCTGCTGGATCACAATCGCGTGAGCGCGCTGCCTCCGGGTGCCTTCGCCAATGCAGGCGCGCTGCTATACCTAGATCTGAGGGAGAACCGGCTTCGGTCGGTGCACGCACGAGCTTTCTGGGGTCTGGGAGTGTTGCAATGGCTGGACCTGAGCTCCAACCAGCTGGAAACTCTGCCTCCTGGCACCTTCGCGCCGCTGCGCGCGCTTAGTTTCCTCTCCCTAGCGGGTAACCGGCTGGCACTCCTGGAGCCTTCGATCCTGGGCCCGCTTCCATTACTGCGAGTGCTCAGCCTGCAGGACAATTCACTATCGGCAATCGAGGCGGGTTTGCTGAATAACTTGCCTGCCCTCGATGTGTTGCGCTTGCATGGCAACCCCTGGACGTGCAACTGTGCGCTGCGTCCCCTTTGCACTTGGCTGCGTAAGCACCCGCGTCCAGCCTCAG
Seq A exon
GTGAGCCATCTGGGGCGCAGGACGGATAATGTTTGGTGCAATTGCTGCCATCTGACGCCGCTCCTGTGTCCCGCAG
Seq C2 exon
AAACTGAGACCCTGCTCTGCGTGTCTCCAAGACTCCAGACGCTCAGCCTACTGACAGCTTTTCCGGATGCCGCCTTCAAACAGTGCACTCAGTCACTAGCAGCGCGAGACCTGGCGGTGGTCTACGCTCTCGGGCCGGTCTCTTTCCTTGCTAGTTTGGCCATCTGCCTGGCATTGGGCTCCGTGCTCACTGCTTGTGGTGCACGGCGCCGCCGCCGCCGCCGCACCACGGTGCGCCACTTACTAAGGAGACAGCTAGACCCCGAGGGCCCACCCTCCCTGGAGGATGCTGGGAGCCCTGTAACAGCAGCTATCCAAGCCTAAGGGGACTGCAGGTTGTTTCTAGTGCTCCTGAAGTGCCTCCGTACTTTGAGAACTCTCCCCAAATCCCTGATCCTCCCTTCACATTCCCTGTAGGCGTCAACAATAGACAAAACCCGGAAATTTTCTGACATTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026961-Lrrc26:NM_146117:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=NA C2=0.196
Domain overlap (PFAM):
C1:
PF138551=LRR_8=WD(100=26.7),PF138551=LRR_8=WD(100=26.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAATAACTTGCCTGCCCT
R:
CCGGAAAAGCTGTCAGTAGGC
Band lengths:
182-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: