RnoINT0086835 @ rn6
Intron Retention
Gene
ENSRNOG00000011457 | Lrrc26
Description
leucine rich repeat containing 26 [Source:RGD Symbol;Acc:1308398]
Coordinates
chr3:2506426-2507752:+
Coord C1 exon
chr3:2506426-2507234
Coord A exon
chr3:2507235-2507310
Coord C2 exon
chr3:2507311-2507752
Length
76 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GCCGCTCCTGTGTCCCGCAGAAA
3' ss Score
10.57
Exon sequences
Seq C1 exon
GAAACTGTTTTGCTAGGGCGGGAGAGTTAATACTTGTGCAGGTGAGGCAGGGACAAGCTCTGGGTCACCTGAACTCCGAAGCCACACAGGGATCAAGGTCCCCTCCTGTTCTCGAGCTGCCTCCATGAGGGGTTCTTTTTTCTCGCGGCTTCCGCCGCAACTCTCTCTGCTGCTGCTGCTGCTGCTGCTGTTGTCGTGGAGACGAGTCTGGACCCAGGAGCACATTGGAACTGACCCTTCCAAATCCCCGGTGGCCCCCGTATGCCCCGAGGCATGTTCATGTTCACCAGGAGGCAAGGCCAATTGCTCCGCGCTGGCGCTGCCCGCGGTACCGGCGGGCCTGAGCTGGCAAGTACGCTCACTGCTGCTGGATCGCAATCGAGTGAGCACACTACCTCCAGGTGCCTTCGCCGATGCAGGCGCACTGCTATACCTAGTCCTGCGGGAGAACCGGCTTCGGTCGGTGCACGCGCGAGCTTTCTGGGGTCTGGGAGTGTTGCAACGGCTGGACCTGAGCTCCAACCAGCTGGAAACTCTGTCTCCTGGCACCTTCACGCCTCTGCGAGCGCTGAGTTTCCTCTCCCTAGCGGGTAACCGGCTGGCACTCCTGGAGCCCTCGATCCTGGGCCCGCTCCCTTTACTGCGGGTGCTCAGCCTGCAGGACAATTCACTATCGGCACTCGAGGCGGGTTTGCTGAATAGCTTGCCTGCCCTCGACGTGTTGCGCTTGCATGGCAACCCCTGGGCGTGCAGCTGCGCGCTGCGCCCGCTTTGCACCTGGCTGCGTAAGCACCCGCGTCCCACTTCAG
Seq A exon
GTGAGCCATCTGGGGCACAGGGCGGATGATGTTTGTTGCCACTGCTGCCATCTGACGCCGCTCCTGTGTCCCGCAG
Seq C2 exon
AAACTGAGACCCTGCTCTGTGTGTCTCCAAAACTTCAAACGCTCAACCTACTGACAGACTTTCCGGACAACGCCTTCAAACAGTGCACGCAGTCACTCGCTGCGCGAGACCTGGCGGTGGTCTATGCTCTCGGGCCGGCCTCTTTCCTTGCCAGTTTAGCCATCTGCCTGGCATTGGGCTCGGTACTCACTGCTTGTGGTGCACGGCGCCGCCGCCGCCGCACCACAGTGCGCCACTTAATAAGGAGACAGCCAGACCCCGAGGGCCCAGCCTCCCTGGAGGATGTTGGGAGCCCTACAACAACAGCTATCCAAGCCTAAGGGTTCCGCTGTTGTTTCTAGCGCTCCTGTAGCATCCCGCACTTTGAAAACTGTCCCCAAATCCCCGATCCTCCCTTCACATTCCCTGTAGGCGTCAACAATAGACAAAACCCGGAAATTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011457:ENSRNOT00000015242:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=NA C2=0.245
Domain overlap (PFAM):
C1:
PF138551=LRR_8=WD(100=26.2),PF138551=LRR_8=WD(100=26.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCTGCAGGACAATTCACT
R:
ACACAGAGCAGGGTCTCAGTT
Band lengths:
180-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]