BtaINT0087213 @ bosTau6
Intron Retention
Gene
ENSBTAG00000045734 | LRRC26
Description
leucine rich repeat containing 26 [Source:HGNC Symbol;Acc:HGNC:31409]
Coordinates
chr11:105920720-105921669:+
Coord C1 exon
chr11:105920720-105921200
Coord A exon
chr11:105921201-105921278
Coord C2 exon
chr11:105921279-105921669
Length
78 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GCCGCGCCCGTGTCCCGCAGAGG
3' ss Score
9.16
Exon sequences
Seq C1 exon
GTGCCGGGGGGCTTGAACCGGCGCGTCCGCGTGCTGCTGCTGAACCACAACCGCGTGCACGCGCTGCCTCCCGGCGCCTTCGTGGATGCCGGCGCTCTGCTCCGCCTGGATCTGCGCGAGAACGGACTGCGCTGGGTGCACGCGCGGGCCTTCTGGGGCCTGGGCGCGCTGGAGCAGCTAGACCTCAGCGCCAACCAGCTAGAGGCGCTGCTGCCCGGCACTTTCGCGCCACTGCGCGCTCTGCGCGCCCTCTCGCTGGCTGAGAACCGGCTGGCACGCCTAGAGCCCGCGGTGCTGGGCGCGCTCCCGCTGCTGCGCGCGCTCAGCCTGCAGGACAACGACCTGCCTGCGCTCGCGTCCGGGCTCCTGGCTGGCCTGCCGGCTCTCAACACGCTGCGCCTGCGCGGCAACCCCTGGACCTGTGGCTGCGCGCTGCGCCCACTCTGCGCCTGGCTTCGCGGGCACCCGCGGCACGCGCCAG
Seq A exon
GTGAGCCCTCGCGGGCGCGGGCGGGACGGGCGGGCGGCTACCCCCGCGACCGTCTGACGCCGCGCCCGTGTCCCGCAG
Seq C2 exon
AGGCCGAGACGCTGCTTTGCGTGTCGCCGGGGCGCCTGACGCTCAGCCCCTTAACCGCCTTCCCGGACGCCGCCTTCAGCCACTGCGCGCGGCCCCTTGCCGCCCGGGATCTGGCCGTGATCTATGGTCTCGGGCCCGTCTCCTTCCTCGCTAGCCTGGCCGCCTGTCTGGCCCTGGGCTCCGCGTTCACTGCCTGCGGCGCTCGCCACCGCCGCCGCCGCCGCGCCGCCGCCCGCCGCCAGCAGAGGAGGCAGCCGGATCCTTGCCCCGGCACGGCCTCGCCTGCGGCCACCGCCGCCCAAGCTTGAGGGGCCGCGGCCGCCCTCGAACCTCCCCCGACCCGCTTGCCCCTTCCGCATTCCTGACAGGCGTCAACAAGCGACACAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000045734:ENSBTAT00000065953:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.275
Domain overlap (PFAM):
C1:
PF138551=LRR_8=WD(100=36.6),PF127992=LRR_4=WD(100=24.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCTGCGCCTGGCTTC
R:
AGACCATAGATCACGGCCAGA
Band lengths:
172-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development