RnoINT0152537 @ rn6
Intron Retention
Gene
ENSRNOG00000040275 | Tmem210
Description
transmembrane protein 210 [Source:RGD Symbol;Acc:2318321]
Coordinates
chr3:2505290-2505666:+
Coord C1 exon
chr3:2505290-2505319
Coord A exon
chr3:2505320-2505476
Coord C2 exon
chr3:2505477-2505666
Length
157 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TGCTGATGTCCATCATGCAGGTT
3' ss Score
6.51
Exon sequences
Seq C1 exon
TGACACGTGCCCTGGACACTCGGAAAACAG
Seq A exon
GTAAGTGTGTCAGAGGAAGTCTCAGAGGTGAGCTGTGTCCCCTCTCCGCCCCCTCCTGAAGTGCAGCTCACAGCTTTATTGAGAGCAACGTCCTCATGGGCTGTTCGCCCCTGGGTGGCCAAGGCCTTGTTGGACCATGCTGATGTCCATCATGCAG
Seq C2 exon
GTTGGAGGAGCCCTATGGGGTCCAGGAAGATCAAATAGACCTGCACACGGTGCACGTGGAGTCCCACCTCATGGACCCTGATCTGGAGGTATCCATGATGCAGTCCTTGGAGAACCAAACCCTCACGGCCATGACTGCTCCTCTACAGCCCCCTCCACCCCCTCCCCCTCCCCCCCCACCTCCAGTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000040275:ENSRNOT00000061987:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=NA C2=0.556
Domain overlap (PFAM):
C1:
PF151951=TMEM210=FE(8.6=100)
A:
NA
C2:
PF151951=TMEM210=PD(53.4=96.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCCTGGACACTCGGAAAA
R:
GAGGGGGAGGGGGTGGAG
Band lengths:
194-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]