BtaINT0149683 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047964 | TMEM210
Description
transmembrane protein 210 [Source:HGNC Symbol;Acc:HGNC:34059]
Coordinates
chr11:105919190-105919518:+
Coord C1 exon
chr11:105919190-105919219
Coord A exon
chr11:105919220-105919344
Coord C2 exon
chr11:105919345-105919518
Length
125 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GACCAGGCCGTGCTGCGCAGGAT
3' ss Score
2.28
Exon sequences
Seq C1 exon
TGAAACGTGCCCTGCACACATGGACAGCAG
Seq A exon
GTGAGTGACCCCAGGGGAGGGCCCCAAGGGTGAGCTGTGCCCCTGGGAGGTGGAGGCCCCCAGGAGGTGGAGGCCTGGGTGGCCAGGGCGGCCTGCAGCCGGCCTGACCAGGCCGTGCTGCGCAG
Seq C2 exon
GATGGTGGGGCACTTCGGGGTGCAGGAAGACCGCATGGACCTGCGCACGGTGCACGTGGAGTCCCACCTCATGGACCCCGACATGGCGGTCCCCATGATGCAGCCCCTGGAAGAGCATGGCCTCATGACCATCACCATGGACCCGACCCTGGAGGAGCCGCCCCCCCCACCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047964:ENSBTAT00000065412:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.331
Domain overlap (PFAM):
C1:
PF151951=TMEM210=FE(8.5=100)
A:
NA
C2:
PF151951=TMEM210=FE(49.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGCACACATGGACAGC
R:
CTCCTCCAGGGTCGGGTC
Band lengths:
178-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development