MmuEX0044337 @ mm9
Exon Skipping
Gene
ENSMUSG00000059625 | Sohlh1
Description
spermatogenesis and oogenesis specific basic helix-loop-helix 1 [Source:MGI Symbol;Acc:MGI:2684956]
Coordinates
chr2:25699444-25700915:-
Coord C1 exon
chr2:25700782-25700915
Coord A exon
chr2:25700006-25700192
Coord C2 exon
chr2:25699444-25699520
Length
187 bp
Sequences
Splice sites
3' ss Seq
CCTATCTTCTCCCTGTTAAGAGT
3' ss Score
6.19
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGTACAGGATCCCCCATGCTTTGGGATGCTGGATACAGACCAGAGCCAGGCTACTGAGAGAGAGTCAGAGCTGCTGGAGAGACCTTCCTCCTGCCCTGGTCATCGCCAGAGCGCGTTGTCATTCAGTGAGCCAG
Seq A exon
AGTCTTCCAGCTTGGGTCCTGGGCTCCCACCCTGGATCCCTCACTCATGGCAGCCAGCCACTCCCGAGGCAAGTGACATTGTTCCTGGTGGGTCACACCAGGTGGCATCCCTGGCCGGGGACCCTGAATCTTCCGGCATGCTGGCTGAGGAGGCCAACTTGGTCTTGGCATCTGTGCCTGATGCCAG
Seq C2 exon
GTACACCACAGGGGCAGGGTCCGATGTGGTGGATGGAGCACCCTTTCTGATGACCACCAATCCTGACTGGTGGTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059625-'4-5,'4-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.935 A=0.889 C2=0.370
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACAGGATCCCCCATGCTT
R:
CCAACCACCAGTCAGGATTGG
Band lengths:
211-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: