MmuALTD0007705-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000062061 | Lcn13
Description
lipocalin 13 [Source:MGI Symbol;Acc:MGI:2387617]
Coordinates
chr2:25557082-25557798:+
Coord C1 exon
chr2:25557082-25557195
Coord A exon
NA
Coord C2 exon
chr2:25557697-25557798
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
ACCTGCCCCCCTCCTCACAGGGA
3' ss Score
11.31
Exon sequences
Seq C1 exon
TTCATAACACGAAGGTTATTCATGTGGAAAAGACGTCGGTGAATGAGCACTACATTTTCTACTGCGAAGGCCGGCACAATGGGACGTCGTCATTCGGGATGGGAAAGCTCATGG
Seq A exon
NA
Seq C2 exon
GGAGAGACTCTGGTGAAAATCCAGAGGCCATGGAAGAATTTAAGAATTTCATAAAGCGCATGAATCTCCGACTGGAAAACATGTTTGTGCCAGAGATCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062061-3-3,4-3-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(27.1=100)
A:
NA
C2:
PF0006118=Lipocalin=FE(24.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATAACACGAAGGTTATTCATGTGGA
R:
CTCCGATCTCTGGCACAAACA
Band lengths:
214-598
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: