MmuINT0005072 @ mm9
Intron Retention
Gene
ENSMUSG00000036770 | 4933433C11Rik
Description
RIKEN cDNA 4933433C11 gene [Source:MGI Symbol;Acc:MGI:1921722]
Coordinates
chr2:25069351-25069662:-
Coord C1 exon
chr2:25069528-25069662
Coord A exon
chr2:25069440-25069527
Coord C2 exon
chr2:25069351-25069439
Length
88 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCAT
5' ss Score
2.99
3' ss Seq
GACCATCCGCCCCACTGCAGAGG
3' ss Score
6.53
Exon sequences
Seq C1 exon
GGCTCGAGAGACGTCCTCCAATCCTGATGGACCTGGATGTCCCTGGCCCAGCCCAGTACGAGGTGCCCAATATGTCTCTGCGAGAGGCCTCTCCACACCCCCAATACACCATCGGTCGCAAGTACCCGGTTCGAG
Seq A exon
GTGCATGCCCCCACAACCCTGCCTGTACTGGGGGAATGGGAACCTCTTGCCCTGAAAACCTCCCCACCGACCATCCGCCCCACTGCAG
Seq C2 exon
AGGGTGGTGGCCGCAGGGCATGGCAGACCATGTGGCTCCAAAGTGAAAGCCCCTTCATGCAGAAGACCGACTTCAACCGAGAGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036770-4933433C11Rik:NM_028961:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.489 A=NA C2=0.367
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGAGACGTCCTCCAATCC
R:
GGCTTTCACTTTGGAGCCACA
Band lengths:
183-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: