MmuALTD0009487-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000036805 | Noxa1
Description
NADPH oxidase activator 1 [Source:MGI Symbol;Acc:MGI:2449980]
Coordinates
chr2:24942459-24942719:-
Coord C1 exon
chr2:24942674-24942719
Coord A exon
chr2:24942650-24942673
Coord C2 exon
chr2:24942459-24942547
Length
24 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGA
5' ss Score
7.22
3' ss Seq
AGTGTCTCCTTTATGAAAAGGTG
3' ss Score
5.06
Exon sequences
Seq C1 exon
AGGTCCCAGGCGGAGCATGCTGGCCACCAGCCATCCTCATCTATGT
Seq A exon
GTAAGAGGGTCCTGAGCACTACGG
Seq C2 exon
GTGGTCACACGAGCCCTGGCCTATATGATAGTTTGCTGGCATCCAGAAGGCCTGGTCCAGGCCCCTCTGAAGTTTCCTCAGGATCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036805-7-6,8-6-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.975 A=NA C2=0.883
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACCAGCCATCCTCATCTA
R:
GAGGAAACTTCAGAGGGGCCT
Band lengths:
103-127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: