MmuEX0023008 @ mm9
Exon Skipping
Gene
ENSMUSG00000055632 | Hmcn2
Description
hemicentin 2 [Source:MGI Symbol;Acc:MGI:2677838]
Coordinates
chr2:31169935-31192149:+
Coord C1 exon
chr2:31169935-31170196
Coord A exon
chr2:31190934-31191092
Coord C2 exon
chr2:31192027-31192149
Length
159 bp
Sequences
Splice sites
3' ss Seq
GACACACTTCAACCCTCCAGGGA
3' ss Score
5.43
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
ATGACGCCTGGGGCGCAGCTCCTGCCGCTGCTCGTGGCGATCTCTACAGCAGTGGCGGCGGTGGTCACGTCTGACGCGCCCACGAAGACGCTGTCCCCCGCCACAGGAGACGCCACCCTAGCCTTCGTCTTCGATGTCACCGGCTCCATGTGGGATGACCTGATGCAGGTGATCGACGGCGCCTCGCGCATTCTGGAGCGCAGCCTGAGCAGCCGCAGCCGGGTCATCGCCAACTATGCGCTGGTGCCTTTCCACGACCCAG
Seq A exon
GGAGGAGGTGATTGCCCAGAGATGAGTGTGGGGGCCATCAAGGCTGCCGTGGAGGTCGCCAACCCAGGCTCCTTCATCTACGTCTTCTCGGATGCCCGTGCCAAGGACTACCACAAGAAGAAGGAGCTTCTGCAGCTCCTGCAGCTGAAGCAGTCACAG
Seq C2 exon
GTGGTCTTTGTGCTGACTGGAGACTGTGGTGACCGCACCCATCCTGGCTACCTGGTCTTCGAGGAGATCGCCTCCACCAGTTCTGGCCAGGTGTTCCAGCTGGACAAACAGCAGGTGTCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055632-'0-2,'0-1,2-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135191=VWA_2=PU(28.5=55.7)
A:
PF135191=VWA_2=FE(30.2=100)
C2:
PF135191=VWA_2=FE(23.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCGATCTCTACAGCAGTG
R:
TCCAGTCAGCACAAAGACCAC
Band lengths:
250-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: