BtaEX6046774 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002319 | HMCN2
Description
hemicentin 2 [Source:HGNC Symbol;Acc:HGNC:21293]
Coordinates
chr11:100626346-100629146:+
Coord C1 exon
chr11:100626346-100626416
Coord A exon
chr11:100628035-100628193
Coord C2 exon
chr11:100629024-100629146
Length
159 bp
Sequences
Splice sites
3' ss Seq
TGACCTGCCCTGTCCTGCAGGGA
3' ss Score
11.2
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATATTGGCCCAGTGACCCTCACATCGGACCCAGCGGTGTTTCAGAGGGAGCTGAGAGAACTCTACGTGCAG
Seq A exon
GGAGGCGGGGACTGCCCAGAGATGAGCTTGGGGGCCATCAAGGCTGCCGTGGAGGTGGCCAACCCCGGCTCCTTCATCTACGTCTTCTCGGACGCCCGCGCCAAGGACTACCACAAGAAGGACGAGGTGCTGAGGCTCCTGCAGCTTAAACAGCCACAG
Seq C2 exon
GTGGTCTTTGTGCTGACGGGGGACTGTGGTGACCGCACCCACCCTGGCTACCTGGCCTACGAGGAGATCGCCGCCACCAGCTCCGGGCAGGTGTTCCACCTGGACAAGCAGCAGGTGACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002319-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135191=VWA_2=FE(13.4=100)
A:
PF135191=VWA_2=FE(30.2=100)
C2:
PF135191=VWA_2=FE(23.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATTGGCCCAGTGACCCTCA
R:
CTCGGTCACCTGCTGCTTG
Band lengths:
194-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]