GgaEX0007052 @ galGal3
Exon Skipping
Gene
ENSGALG00000005141 | HMCN1
Description
NA
Coordinates
chr8_random:220237-224187:+
Coord C1 exon
chr8_random:220237-220305
Coord A exon
chr8_random:223400-223558
Coord C2 exon
chr8_random:224065-224187
Length
159 bp
Sequences
Splice sites
3' ss Seq
CTTCTTCTAATTGTAAACAGGGT
3' ss Score
7.54
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
ATTGGTCCGGTGACGATAACCACAGATCCCAAAAAATTTCAGTTTGAACTCAGGGAGCTTTATGTTCAG
Seq A exon
GGTGGTGGAGACTGTCCAGAGATGAGCATTGGAGCAATTAAAATTGCTCTAGAAATCTCTCTTCCTGGTTCTTTCATCTATGTATTTACTGATGCACGATCCAAAGACTATAGACTCACCCATGAAGTACTTCAGCTCATTCAACAGAAGCAGTCACAG
Seq C2 exon
GTAGTATTTGTGCTAACTGGAGACTGTGATGACAGAGATCATATTGGTTACAAAGTCTATGAAGAAATTGCCTCAACAAGCTCTGGTCAAGTTTTTCACTTAGACAAAAAGCAAGTTAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005141-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135191=VWA_2=PU(16.7=87.0)
A:
PF135191=VWA_2=FE(43.3=100)
C2:
PF135191=VWA_2=FE(33.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGACGATAACCACAGATCCC
R:
AACTTGCTTTTTGTCTAAGTGAAAAA
Band lengths:
178-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]