BtaEX6070482 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015235 | HMCN1
Description
Bos taurus hemicentin 1 (HMCN1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192537]
Coordinates
chr16:68315400-68340717:+
Coord C1 exon
chr16:68315400-68315470
Coord A exon
chr16:68338873-68339031
Coord C2 exon
chr16:68340595-68340717
Length
159 bp
Sequences
Splice sites
3' ss Seq
TTCTCATTGTTTCTCAACAGGGT
3' ss Score
11.22
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AGATTGGCCCAGTAACAGTTACCACAGATCCCAAGAAATTTCAATATGAGCTCAGAGAACTCTATGTTCAG
Seq A exon
GGTGGTGGCGATTGTCCAGAAATGAGTATCGGAGCTATAAAAATTGCCTTGGAAATTTCCCTTCCTGGGTCTTTCATCTACGTTTTCACTGATGCGCGATCCAAGGATTATCGACTCACTCATGAGGTGCTGCAGCTTATCCAGCAGAAACAGTCACAG
Seq C2 exon
GTGGTATTTGTGCTTACTGGAGATTGTGATGACAGAAGCCATATTGGATACAGAGTCTATGAAGAAATTGCCTCTACAAGTTCTGGTCAAGTGTTCCATCTGGACAAAAAACAAGTTAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015235-'1-3,'1-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSBTAT00000061144fB3256
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCAGTAACAGTTACCACA
R:
TGGAACACTTGACCAGAACTTGT
Band lengths:
164-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]