RnoEX6044589 @ rn6
Exon Skipping
Gene
ENSRNOG00000028627 | Hmcn1
Description
hemicentin 1 [Source:RGD Symbol;Acc:1564772]
Coordinates
chr13:68229369-68253250:-
Coord C1 exon
chr13:68253180-68253250
Coord A exon
chr13:68230439-68230597
Coord C2 exon
chr13:68229369-68229491
Length
159 bp
Sequences
Splice sites
3' ss Seq
TCTTGCTTTCTGTTCAACAGGGA
3' ss Score
10.06
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
AAATCGGTCCAGTGACAATTACCACAGATCCGAAAAAATTTCAGTATGAACTGAGAGAACTGTATGTTCAG
Seq A exon
GGAGGTGGCGATTGTCCAGAAATGAGTGTCGGGGCTATAAAGATTGCCCTGGAAATTTCTCTTCCTGGTTCCTTCATCTATGTTTTCACTGATGCACGATCCAAGGATTATCGTCTCACCCATGAGGTGCTGCAGCTTATCCAGCAGAAACAATCCCAA
Seq C2 exon
GTGGTATTTGTGCTCACTGGAGACTGTGATGACAGGAACCATATTGGATACAAAGTCTATGAAGAAATTGCTTCTACAAGTTCTGGTCAAGTGTTCCATCTGGACAAAAAGCAAGTAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028627-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135191=VWA_2=FE(13.4=100)
A:
PF135191=VWA_2=FE(30.2=100)
C2:
PF135191=VWA_2=FE(23.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCGGTCCAGTGACAATTACCA
R:
CTCATTTACTTGCTTTTTGTCCAGA
Band lengths:
194-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]