MmuALTD0012772-1/3 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000026860 | Sh3glb2
Description
SH3-domain GRB2-like endophilin B2 [Source:MGI Symbol;Acc:MGI:2385131]
Coordinates
chr2:30210373-30210885:-
Coord C1 exon
chr2:30210803-30210885
Coord A exon
NA
Coord C2 exon
chr2:30210373-30210501
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCTG
5' ss Score
2.64
3' ss Seq
TGACTGCTATCTCCCTACAGGTG
3' ss Score
12.75
Exon sequences
Seq C1 exon
AGCTTGACGCCCACTTTGAAAACCTCCTAGCTCGGGCAGACAGCACCAAGAACTGGACAGAGCGGATCCTGAGGCAGACCGAG
Seq A exon
NA
Seq C2 exon
GTGCTCGAGTGGAGGAGTTCCTATATGAGAAGCTGGACAGAAAGGTGCCCTCGAGAGTCACCAATGGGGAGCTGCTGGCTCAGTACATGGCGGAGGCAGCCAGCGAGCTGGGCCCCAGCACTCCCTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026860-1-3,2-3,3-3-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(17.0=100)
A:
NA
C2:
PF0311413=BAR=FE(15.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTGGACAGAGCGGATCCT
R:
TCCCCATTGGTGACTCTCGAG
Band lengths:
104-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: