MmuEX0015285 @ mm9
Exon Skipping
Gene
ENSMUSG00000026825 | Dnm1
Description
dynamin 1 [Source:MGI Symbol;Acc:MGI:107384]
Coordinates
chr2:32176024-32178993:-
Coord C1 exon
chr2:32178942-32178993
Coord A exon
chr2:32178699-32178710
Coord C2 exon
chr2:32176024-32176137
Length
12 bp
Sequences
Splice sites
3' ss Seq
CTATGGTTACCTCTTTGCAGGAT
3' ss Score
8.42
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
TGCTCAGCAGAGAAGCAACCAGATGAACAAGAAGAAGACTTCAGGGAACCAG
Seq A exon
GATGAGATTCTG
Seq C2 exon
GTCATTCGAAAGGGGTGGTTGACCATCAACAACATCGGCATCATGAAGGGAGGCTCCAAGGAGTACTGGTTTGTGCTGACTGCTGAGAATCTGTCCTGGTACAAGGATGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026825-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.406 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=PD(4.4=72.2)
A:
NO
C2:
PF0016924=PH=PU(35.6=97.4)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGCAGAGAAGCAACCAG
R:
CCTCCCTTCATGATGCCGATG
Band lengths:
104-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: