BtaEX0011731 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011307 | DNM1
Description
Bos taurus dynamin 1 (DNM1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076820]
Coordinates
chr11:98862686-98865341:+
Coord C1 exon
chr11:98862686-98862737
Coord A exon
chr11:98862943-98862954
Coord C2 exon
chr11:98865228-98865341
Length
12 bp
Sequences
Splice sites
3' ss Seq
CTATGGTTACCTCTTTGCAGGAT
3' ss Score
8.42
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
TGCTCAGCAGAGAAGCAACCAGATGAACAAGAAGAAGGCTTCAGGGAACCAG
Seq A exon
GATGAGATTCTG
Seq C2 exon
GTCATCCGGAAGGGCTGGCTGACCATCAACAACATCGGCATCATGAAGGGAGGCTCCAAGGAGTATTGGTTTGTGCTGACTGCCGAGAATCTGTCCTGGTACAAGGATGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011307-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.389 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=PD(4.4=72.2)
A:
NO
C2:
PF0016924=PH=PU(35.6=97.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGCAGAGAAGCAACCAG
R:
CCTCCCTTCATGATGCCGATG
Band lengths:
104-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development