GgaEX0006667 @ galGal3
Exon Skipping
Gene
ENSGALG00000004852 | E1BV15_CHICK
Description
NA
Coordinates
chr17:5671273-5673992:-
Coord C1 exon
chr17:5673941-5673992
Coord A exon
chr17:5672607-5672618
Coord C2 exon
chr17:5671273-5671386
Length
12 bp
Sequences
Splice sites
3' ss Seq
GCTATGGTTCCCCTTTGCAGGAT
3' ss Score
9.24
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
TGCTCAGCAGAGGAGCAGCCAGATGAGCAAGAAGAAGGCAGCTGGCAACCAG
Seq A exon
GATGAGATCCTG
Seq C2 exon
GTCATCCGAAAGGGCTGGCTCACCATCAACAACATTGGGATCATGAAGGGTGGCTCCAAGGAGTACTGGTTTGTCCTGACAGCGGAGAACCTCTCCTGGTATAAGGATGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004852-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.258 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=PD(4.4=72.2)
A:
NO
C2:
PF0016924=PH=PU(35.6=97.4)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCAAGAAGAAGGCAGCTG
R:
TACTCCTTGGAGCCACCCTTC
Band lengths:
94-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]