DreEX0027744 @ danRer10
Exon Skipping
Gene
ENSDARG00000010042 | dnm1a
Description
dynamin 1a [Source:ZFIN;Acc:ZDB-GENE-081104-27]
Coordinates
chr5:1292374-1303869:+
Coord C1 exon
chr5:1292374-1292422
Coord A exon
chr5:1298600-1298611
Coord C2 exon
chr5:1303756-1303869
Length
12 bp
Sequences
Splice sites
3' ss Seq
CTTTTACTCGGCTGCATCAGGAT
3' ss Score
3.58
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
TGCTCAACAGAGAAGCAGTCAGATTAAGAAGAAAGCAGCTGGGAATCAG
Seq A exon
GATGAGATCATG
Seq C2 exon
GTGATCAGGAAGGGCTGGCTGACTATCAATAACATTGGCATCATGAAGGGCGGAGCTAAAGAGTACTGGTTTGTGCTGACGGCCGAATCACTGTCCTGGTACAAGGATGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010042-MICROEX2
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.127 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=PD(4.1=70.6)
A:
NO
C2:
PF0016924=PH=PU(35.6=97.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCAACAGAGAAGCAGTCA
R:
CGCCCTTCATGATGCCAATGT
Band lengths:
101-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]