MmuEX0015285 @ mm10
Exon Skipping
Gene
ENSMUSG00000026825 | Dnm1
Description
dynamin 1 [Source:MGI Symbol;Acc:MGI:107384]
Coordinates
chr2:32320504-32323473:-
Coord C1 exon
chr2:32323422-32323473
Coord A exon
chr2:32323179-32323190
Coord C2 exon
chr2:32320504-32320617
Length
12 bp
Sequences
Splice sites
3' ss Seq
CTATGGTTACCTCTTTGCAGGAT
3' ss Score
8.42
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
TGCTCAGCAGAGAAGCAACCAGATGAACAAGAAGAAGACTTCAGGGAACCAG
Seq A exon
GATGAGATTCTG
Seq C2 exon
GTCATTCGAAAGGGGTGGTTGACCATCAACAACATCGGCATCATGAAGGGAGGCTCCAAGGAGTACTGGTTTGTGCTGACTGCTGAGAATCTGTCCTGGTACAAGGATGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026825-'28-32,'28-27,29-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.394 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=PD(18.6=72.2)
A:
NO
C2:
PF0016924=PH=PU(35.6=97.4)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGCAGAGAAGCAACCAG
R:
CCTCCCTTCATGATGCCGATG
Band lengths:
104-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types