DreEX0027775 @ danRer10
Exon Skipping
Gene
ENSDARG00000069937 | dnm2a
Description
dynamin 2a [Source:ZFIN;Acc:ZDB-GENE-050913-84]
Coordinates
chr3:50371178-50382104:+
Coord C1 exon
chr3:50371178-50371226
Coord A exon
chr3:50374252-50374263
Coord C2 exon
chr3:50381994-50382104
Length
12 bp
Sequences
Splice sites
3' ss Seq
CCTCTTACTTATCACTACAGGGT
3' ss Score
7.55
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
TGCACAGCAAAGGAATATCGTCAACAAGAAGAGGGCCATTCCCAACCAG
Seq A exon
GGTGAAATCCTG
Seq C2 exon
GTGATCCGTAAAGGCTGGTTAACCCTGAACATCAGCATCATGAAAGGAGGTTCAAAGGAGTACTGGTTCGTCCTGACTGCCGAATCGCTGTCCTGGTACAAAGACGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069937-MICROEX2
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=PD(4.1=70.6)
A:
NO
C2:
PF0016924=PH=PU(35.0=97.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCAACAAGAAGAGGGCCAT
R:
TCAGGACGAACCAGTACTCCT
Band lengths:
107-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]