RnoEX0029035 @ rn6
Exon Skipping
Gene
ENSRNOG00000033835 | Dnm1
Description
dynamin 1 [Source:RGD Symbol;Acc:71096]
Coordinates
chr3:11350431-11352923:-
Coord C1 exon
chr3:11352872-11352923
Coord A exon
chr3:11352634-11352645
Coord C2 exon
chr3:11350431-11350544
Length
12 bp
Sequences
Splice sites
3' ss Seq
CTATGGTTACCTCTTTGCAGGAT
3' ss Score
8.42
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
TGCTCAGCAGAGAAGCAACCAGATGAACAAGAAGAAGACTTCAGGGAACCAG
Seq A exon
GATGAGATTCTG
Seq C2 exon
GTCATTCGAAAGGGGTGGCTGACCATCAACAACATCGGCATCATGAAGGGAGGCTCCAAGGAGTACTGGTTTGTGTTGACTGCTGAGAATCTGTCCTGGTACAAGGACGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033835-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.389 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=PD(4.4=72.2)
A:
NO
C2:
PF0016924=PH=PU(35.6=97.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGCAGAGAAGCAACCAG
R:
CCTCCCTTCATGATGCCGATG
Band lengths:
104-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]