HsaEX0020438 @ hg38
Exon Skipping
Gene
ENSG00000106976 | DNM1
Description
dynamin 1 [Source:HGNC Symbol;Acc:HGNC:2972]
Coordinates
chr9:128239728-128242345:+
Coord C1 exon
chr9:128239728-128239779
Coord A exon
chr9:128239985-128239996
Coord C2 exon
chr9:128242232-128242345
Length
12 bp
Sequences
Splice sites
3' ss Seq
CTATGGTTACCTCTTTGCAGGAT
3' ss Score
8.42
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
TGCTCAGCAGAGGAGCAACCAGATGAACAAGAAGAAGACTTCAGGGAACCAG
Seq A exon
GATGAGATTCTG
Seq C2 exon
GTCATCCGCAAGGGCTGGCTGACTATCAATAATATTGGCATCATGAAAGGGGGCTCCAAGGAGTACTGGTTTGTGCTGACTGCTGAGAATCTGTCCTGGTACAAGGATGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106976-'40-57,'40-48,41-57
Average complexity
S
Mappability confidence:
94%=100=83%
Protein Impact
Alternative protein isoforms (Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.426 A=0.023 C2=0.000
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=PD(18.6=72.2)
A:
NO
C2:
PF0016924=PH=PU(35.6=97.4)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGAGGAGCAACCAGATG
R:
GCCCCCTTTCATGATGCCAAT
Band lengths:
102-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development