HsaEX0020441 @ hg38
Exon Skipping
Gene
ENSG00000106976 | DNM1
Description
dynamin 1 [Source:HGNC Symbol;Acc:HGNC:2972]
Coordinates
chr9:128239985-128242345:+
Coord C1 exon
chr9:128239985-128239996
Coord A exon
chr9:128240427-128240532
Coord C2 exon
chr9:128242232-128242345
Length
106 bp
Sequences
Splice sites
3' ss Seq
CTCCTGCTCTCTGTCCTTAGATG
3' ss Score
12.44
5' ss Seq
TTTGTAAGA
5' ss Score
3.14
Exon sequences
Seq C1 exon
GATGAGATTCTG
Seq A exon
ATGTCTGCGGAAACATCCCTCGTCAGAAGCGCTTGCTCAGTTGTACACATGAGCCCGAGGGTCCTCAGCTTTTCTTTCCATAGGTTCCAGAGGCCGTAGTTTCTTT
Seq C2 exon
GTCATCCGCAAGGGCTGGCTGACTATCAATAATATTGGCATCATGAAAGGGGGCTCCAAGGAGTACTGGTTTGTGCTGACTGCTGAGAATCTGTCCTGGTACAAGGATGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106976_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0016924=PH=PU(35.6=97.4)
Main Inclusion Isoform:
ENST00000341179fB2142
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development