HsaEX0020441 @ hg19
Exon Skipping
Gene
ENSG00000106976 | DNM1
Description
dynamin 1 [Source:HGNC Symbol;Acc:2972]
Coordinates
chr9:131002264-131004624:+
Coord C1 exon
chr9:131002264-131002275
Coord A exon
chr9:131002706-131002811
Coord C2 exon
chr9:131004511-131004624
Length
106 bp
Sequences
Splice sites
3' ss Seq
CTCCTGCTCTCTGTCCTTAGATG
3' ss Score
12.44
5' ss Seq
TTTGTAAGA
5' ss Score
3.14
Exon sequences
Seq C1 exon
GATGAGATTCTG
Seq A exon
ATGTCTGCGGAAACATCCCTCGTCAGAAGCGCTTGCTCAGTTGTACACATGAGCCCGAGGGTCCTCAGCTTTTCTTTCCATAGGTTCCAGAGGCCGTAGTTTCTTT
Seq C2 exon
GTCATCCGCAAGGGCTGGCTGACTATCAATAATATTGGCATCATGAAAGGGGGCTCCAAGGAGTACTGGTTTGTGCTGACTGCTGAGAATCTGTCCTGGTACAAGGATGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106976_MULTIEX1-2/2=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.031 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0016924=PH=PU(35.6=97.4)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)