DreEX0027755 @ danRer10
Exon Skipping
Gene
ENSDARG00000009281 | dnm1b
Description
dynamin 1b [Source:ZFIN;Acc:ZDB-GENE-100920-3]
Coordinates
chr5:63019994-63026437:+
Coord C1 exon
chr5:63019994-63020045
Coord A exon
chr5:63022928-63022939
Coord C2 exon
chr5:63026324-63026437
Length
12 bp
Sequences
Splice sites
3' ss Seq
CCTATGCCAACGCTCCTCAGGAT
3' ss Score
5.05
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
CGCCCAACAGAGAAGCAGTCAGATGAATAAGAAGAAAGCTGCTGGCAATCAG
Seq A exon
GATGAGATAATG
Seq C2 exon
GTGATCAGAAAGGGTTGGCTCACCATCAATAACATTGGCATCATGAAAGGAGGAGCGAAGGAGTACTGGTTTGTCATGACCGCTGAAAATCTGTCCTGGTACAAGGATGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009281-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=PD(4.4=72.2)
A:
NO
C2:
PF0016924=PH=PU(35.6=97.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAACAGAGAAGCAGTCAG
R:
CGCTCCTCCTTTCATGATGCC
Band lengths:
108-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]