MmuEX0006156 @ mm9
Exon Skipping
Gene
ENSMUSG00000026960 | Arl6ip6
Description
ADP-ribosylation factor-like 6 interacting protein 6 [Source:MGI Symbol;Acc:MGI:1929507]
Coordinates
chr2:53053318-53076568:+
Coord C1 exon
chr2:53053318-53053371
Coord A exon
chr2:53061953-53062085
Coord C2 exon
chr2:53076329-53076568
Length
133 bp
Sequences
Splice sites
3' ss Seq
TTCCCTTTTTTCCCTTAAAGGCT
3' ss Score
10.2
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
AATTGCATGCAGAAAACTTGAAAAATGAAGATGATATACATACTGGGCTGTTAG
Seq A exon
GCTTCTGGTCTCTGCTGATAATATCTCTAACTGCTGGATTGTCCTGTTGCAGCTTTTCTTGGACAGTGACTTACTTTGATTCATTTGAACCAGGAATGTTTCCACCCACTCCTCTTTCACCTGCTAGGTTCAA
Seq C2 exon
GAAACTGACTGGACATTCTTTCCACATGGGCTACAGCATGGCAATTTTGAATGGTATTGTCGCTGCTCTCACTGTGGCATGGTGCCTCATGTAAACCTACACTAGAGCAACGTTGTTGGTGAAAGTCATGATGGTTTTTGAAGTAGCAGAAACGAAATTGCTGACTCAGAAGACTTTGAAATGTGATCAGATACTTACTATCATCATTATGGAAGACCTTATAGAGGGCACTTCTTCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026960-'3-9,'3-3,5-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF150621=ARL6IP6=PU(18.2=73.7)
A:
PF150621=ARL6IP6=FE(57.1=100)
C2:
PF150621=ARL6IP6=PD(23.4=56.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGATATACATACTGGGCTGTT
R:
AGTGCCCTCTATAAGGTCTTCCA
Band lengths:
258-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: