RnoEX0011653 @ rn6
Exon Skipping
Gene
ENSRNOG00000005074 | Arl6ip6
Description
ADP ribosylation factor like GTPase 6 interacting protein 6 [Source:RGD Symbol;Acc:1564819]
Coordinates
chr3:38743630-38768008:+
Coord C1 exon
chr3:38743630-38743683
Coord A exon
chr3:38753063-38753195
Coord C2 exon
chr3:38766879-38768008
Length
133 bp
Sequences
Splice sites
3' ss Seq
TTCCCTCTCTTCCCATAAAGGAT
3' ss Score
9.48
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
AATTGCATACAGAAAACTCGAAAAATGAAGATGTCGTAGATACGGGGCTGTTAG
Seq A exon
GATTCTGGTCTCTGCTGATAATATCTCTAACTGCTGGATTATCCTGTTGCAGCTTTTCTTGGACAGTGACTTACTTTGATTCTTTTGAACCAGGAATGTTTCCGCCTACTCCTCTTTCACCTGCTAGGTTCAA
Seq C2 exon
GAAACTGACTGGACATTCTTTCCACATGGGCTACAGCATGGCAATTCTGAATGGTGTTGTAGCTGCTCTCACTGTGGCATGGTGCCTTATGTAAACCCACAATAGAACAACATTGTTGGTGAAAGTCATTGTTTTTGAAGTTACAGAAATGAAATTGCCTACTCAGAAGACTGAGAAATGTGATTCATATACATACTATCATCATCATTATGGAAGACCTTATAGAGGCCATTTTTTAAATCTATAAGATGTTTACTTCATCTTTTTTTACTTTTGTGTAGTTTATATCTGTTACAGAAATTATTTCAGTGGAAATCAAACATGGAAACTTGAATACAGGACCATGCCTACCTTTCTATGCACATTTTACTTTTTACTAACATTAATATTACTGGTTGAGGTAGAAATATTTATATACTACATTAAGAAAACAGTACTGAGGCCAAGTGTATTAGCAAGACCTTAAAGCCCAGCATTTTGGAGAGAGAAGCAGGTTCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005074-'5-7,'5-3,8-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF150621=ARL6IP6=PU(18.2=73.7)
A:
PF150621=ARL6IP6=FE(57.1=100)
C2:
PF150621=ARL6IP6=PD(23.4=56.2)
Main Skipping Isoform:
ENSRNOT00000006774fB1439
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGAAAAATGAAGATGTCGTAGA
R:
AGGTCTTCCATAATGATGATGATAGT
Band lengths:
258-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]