HsaEX0005883 @ hg19
Exon Skipping
Gene
ENSG00000177917 | ARL6IP6
Description
ADP-ribosylation-like factor 6 interacting protein 6 [Source:HGNC Symbol;Acc:24048]
Coordinates
chr2:153577047-153617688:+
Coord C1 exon
chr2:153577047-153577100
Coord A exon
chr2:153591508-153591640
Coord C2 exon
chr2:153616261-153617688
Length
133 bp
Sequences
Splice sites
3' ss Seq
CCCTCTCTTTTCCTGTTAAGGAT
3' ss Score
10.27
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
AGTTGCATGCTGAGAATTTGAAAAATGAAGATGATGTAGACACTGGACTATTAG
Seq A exon
GATTCTGGACTCTACTTATAATATCCCTAACTGCTGGATTCTCCTGTTGCAGCTTTTCTTGGACAGTGACTTACTTTGATTCTTTTGAACCAGGAATGTTTCCTCCTACTCCTCTTTCACCTGCCAGGTTCAA
Seq C2 exon
GAAACTGACTGGACATTCTTTCCACATGGGCTATAGCATGGCGATTTTGAATGGCATCGTAGCTGCTCTTACTGTAGCATGGTGCCTCATGTAAACCCACACTGGAGCGATATTGTTGGCAAAACTTAATCATGATTGTTTTGTAATAACAAGAAGGAGCATCACTGTCTACTCAGAAGACTGAGAAACCTGCTGTTCATTATGTAGTTCAGATATTTATCACAATCATCCTCATTATGGAAGACCTTTTAAAGCATTGTTTTAGAATGTCTGAGTATTAAGATACAGATTAATTGGGAATATCTGAGTATTAAGTACTTTCTTCAGAGTATAAGATGTTTACCTCATCTTTTTACTTTTGTGTGTGTAGTTCTTTCAAGTTGTAGGAAACATTTTAATGGAATTTAAACTCAAAAACTTGAATACAGGACAATGCTTGCCTTTTCATGTATGTACTACATTTTTTGCTAAGAAATACTGATATTTCTGTTTAGTTGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177917_MULTIEX2-2/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0106119=ABC2_membrane=FE(18.2=100),PF065706=DUF1129=FE(20.0=100),PF150621=ARL6IP6=PU(21.2=73.7)
A:
PF0106119=ABC2_membrane=PD(41.4=91.1),PF065706=DUF1129=PD(31.1=62.2),PF150621=ARL6IP6=FE(66.7=100)
C2:
PF150621=ARL6IP6=PD(23.4=56.2)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGCATGCTGAGAATTTGAA
R:
TGAACAGCAGGTTTCTCAGTCT
Band lengths:
253-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)