BtaEX0004345 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001435 | ARL6IP6
Description
Bos taurus ADP-ribosylation-like factor 6 interacting protein 6 (ARL6IP6), mRNA. [Source:RefSeq mRNA;Acc:NM_001034281]
Coordinates
chr2:43543016-43582381:-
Coord C1 exon
chr2:43582328-43582381
Coord A exon
chr2:43570457-43570589
Coord C2 exon
chr2:43543016-43544447
Length
133 bp
Sequences
Splice sites
3' ss Seq
TCTCCTGTTTGCCCATTAAGGAT
3' ss Score
8.18
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
AGTTACATGCTGAAAATTTGAAGAATGAAGATGATGTAAACACTGGACTGTTAG
Seq A exon
GATTCTGGAGTCTACTTATAATATCCCTAACTGCTGGATTCTCCTGCTGCAGCTTTTCTTGGACAGTGACTTACTTTGATTCTTTTGAACCAGGAATGTTTCCTCCTACTCCTCTTTCACCTGCCAGGTTCAA
Seq C2 exon
GAAAATGACCGGGCATTCCTTCCACATGGGCTACAGTATGGCAATTTTGAATGGCATTGTAGCTGCTCTTACTGTAGCTTGGTGCCTCATGTAAACCTGCACTGAAGCAAAGTACTGGACAAAACTTAGTCATGATTACTTTGTAATAACAGAACATCACTGCCTATTCAGAAGACCAAGAAAGTTGCTGCTCATTATGTGGTTCAGATATAAGTCATATCATCATCATTATGGAGGACTTTTTCTAGAGCCGAGGCATTGGGAATATATAAGTATTCAGTTTCAAGTAGTTCTTAAAAGTATAAGATGTTTACCTCATCTTTTTACTTTTGTGTGTGTTGTCCTTATAAGTTGTAGAAAACATTTTAATGGAAATCAAACTCAGAAACCTAGATGCAGAACATCCTGTATCAAAGCCCGCTTTTCCATGTATATACTACATTTTTGCTAAGAAATACTGATAGTACTTTTGAGATAGAAATATTTCTTATTTATTCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001435_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF150621=ARL6IP6=PU(18.2=73.7)
A:
PF150621=ARL6IP6=FE(57.1=100)
C2:
PF150621=ARL6IP6=PD(23.4=56.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGCTGAAAATTTGAAGAATGAAG
R:
TGAGCAGCAACTTTCTTGGTCT
Band lengths:
244-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development