MmuEX0025157 @ mm9
Exon Skipping
Gene
ENSMUSG00000058740 | Kcnt1
Description
potassium channel, subfamily T, member 1 [Source:MGI Symbol;Acc:MGI:1924627]
Coordinates
chr2:25763036-25764826:+
Coord C1 exon
chr2:25763036-25763170
Coord A exon
chr2:25763699-25763849
Coord C2 exon
chr2:25764725-25764826
Length
151 bp
Sequences
Splice sites
3' ss Seq
AAGCAGGCTCCTCCTGGCAGGCC
3' ss Score
3.7
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
CCTGGACAGCTTACTGCAGTGTGGCATCATCTATGCTGACAACCTGGTGGTGGTGGACAAGGAGAGCACTATGAGCGCTGAAGAGGACTACATGGCAGATGCCAAGACCATCGTCAATGTGCAAACCATGTTCCG
Seq A exon
GCCGTCCTTCACTGAAGAGGCCAGAGAGAACAGGACAAAGAGGAAGAGACAGGGCTGTGGGAGCATCGGCTACTGGCTACTGTCCCGCAGTAGCTGAGGAGACAGGCTCAGTTGCTGGTGCTGTGGTGCTACATCCCCCGAGCACCTGCAG
Seq C2 exon
CAAGAACGGGAGAACGGCTCCAACCTGGCCTTCATGTTCCGCCTGCCATTTGCTGCTGGTCGAGTATTTAGTATCAGCATGTTGGATACACTGCTCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058740-'35-43,'35-42,37-43
Average complexity
ME(40_36-42_37[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTTACTGCAGTGTGGCAT
R:
AGAGCAGTGTATCCAACATGCTG
Band lengths:
226-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: