MmuEX0038012 @ mm9
Exon Skipping
Gene
ENSMUSG00000053746 | Ptrh1
Description
peptidyl-tRNA hydrolase 1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1913779]
Coordinates
chr2:32632227-32645691:+
Coord C1 exon
chr2:32632227-32632326
Coord A exon
chr2:32632642-32633089
Coord C2 exon
chr2:32645108-32645691
Length
448 bp
Sequences
Splice sites
3' ss Seq
ATTCCCCTGGGACCCTACAGGCA
3' ss Score
5.52
5' ss Seq
GATCTGCAA
5' ss Score
-19.11
Exon sequences
Seq C1 exon
CGGAGCTGTTTGGGCTGACTGCGGAGGAGATCTATCTGGTCCATGATGAACTGGACAAGCCGTTGGGAAAGCTGGCTCTGAAGCTGGGGGGCAGCGCAAG
Seq A exon
GCAATGCCAAGGCTGCTGGTGGGCATCGGGCGCCCCACACACCCTAATATGGTGGAGAACCATGTCCTGGGCTGTTTCTCCCCGGAGGAGCAGGAGCTACTGTCCCCATTGATGGATCAGGCCACTGACCTGCTCCTGGACCACATCCGTGCTCGAAGCCAGGGACCATTGTCAGGCCTCTAATACCAGTGGATATATCTACCTGTTTGACTGCCTGCCGGTGCCATGAAGCCAAGACAGGGCCACAGAACTGCAATGACACAGTGGTACCCAATGTTTATATAACTTCCCTGGGTTTCCCCAGGCTACTTGCAGATTCAAGGAGGGACTGTGGCCACATCAGTCTGTTTCTGCAGCAGCTTGGTCTCCCCGTTCGCTATTTGCGGTGTAGGAAAGGTCTAGGAAGGGTAAACTTTCTGAACCTTTTGAGAGCTCCAGATGGGTAGAT
Seq C2 exon
CTTCTTCAGCGTGTCCAGCAGTTTCTGTGGGGTGAGAATGTGCGTGGATCCTGGGAAGGCAGAGAAGACAGTGAGCTCACTCACCTGTGGTGGCCTGAGGCTTCTGTCCCCGACTCTCCATCCCCCCAACCCTGGTCTGGGTCCAGTGGAAGCTGGGAAGGGTTTGGGGATGGAACCCTTGGGTCCCCGTCAACTAGGCTAAGGAAGCATTTAGGCTCACGCAGGGTCCCAGGATGACCCAGAGCCATCTGTCAGGTGATGGGTGACTGCTTCATTCTCTCTTGAAGTTAAGGTGAAGCCAGGTAGAGAAATTTCAAATATGGCAAGAGACAGTGGCTGAGAAGGGCAGAGGCTTGGAGGTGTCTCTATGTAGAGAGAATGGTGCCTGGCAGGGCATGGGGACCCACTAACCTCTGGGAGCCGGCATGTTGGTGCTGGCACAGTGGGGGACCTCAGGTGTGAGGGAAAGGGCGGGGACCTGAGGCCTTACCTTGTGGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053746_MULTIEX1-2/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.023 C2=0.343
Domain overlap (PFAM):
C1:
PF0119514=Pept_tRNA_hydro=FE(18.4=100)
A:
PF0119514=Pept_tRNA_hydro=PD(30.7=90.2)
C2:
PF0119514=Pept_tRNA_hydro=PD(0.9=1.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGGAGGAGATCTATCTGGT
R:
GAAGCAGTCACCCATCACCTG
Band lengths:
354-802
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: