MmuEX0038011 @ mm9
Exon Skipping
Gene
ENSMUSG00000053746 | Ptrh1
Description
peptidyl-tRNA hydrolase 1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1913779]
Coordinates
chr2:32632227-32645691:+
Coord C1 exon
chr2:32632227-32632326
Coord A exon
chr2:32632503-32632548
Coord C2 exon
chr2:32645108-32645691
Length
46 bp
Sequences
Splice sites
3' ss Seq
GCTCTTCATATCCCCTCAAGGGG
3' ss Score
4.51
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
CGGAGCTGTTTGGGCTGACTGCGGAGGAGATCTATCTGGTCCATGATGAACTGGACAAGCCGTTGGGAAAGCTGGCTCTGAAGCTGGGGGGCAGCGCAAG
Seq A exon
GGGCCATAATGGAGTCCGTTCCTGCATTAGCTGTCTGAACTCCAAT
Seq C2 exon
CTTCTTCAGCGTGTCCAGCAGTTTCTGTGGGGTGAGAATGTGCGTGGATCCTGGGAAGGCAGAGAAGACAGTGAGCTCACTCACCTGTGGTGGCCTGAGGCTTCTGTCCCCGACTCTCCATCCCCCCAACCCTGGTCTGGGTCCAGTGGAAGCTGGGAAGGGTTTGGGGATGGAACCCTTGGGTCCCCGTCAACTAGGCTAAGGAAGCATTTAGGCTCACGCAGGGTCCCAGGATGACCCAGAGCCATCTGTCAGGTGATGGGTGACTGCTTCATTCTCTCTTGAAGTTAAGGTGAAGCCAGGTAGAGAAATTTCAAATATGGCAAGAGACAGTGGCTGAGAAGGGCAGAGGCTTGGAGGTGTCTCTATGTAGAGAGAATGGTGCCTGGCAGGGCATGGGGACCCACTAACCTCTGGGAGCCGGCATGTTGGTGCTGGCACAGTGGGGGACCTCAGGTGTGAGGGAAAGGGCGGGGACCTGAGGCCTTACCTTGTGGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053746_MULTIEX1-1/2=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.343
Domain overlap (PFAM):
C1:
PF0119514=Pept_tRNA_hydro=FE(18.4=100)
A:
PF0119514=Pept_tRNA_hydro=FE(8.4=100)
C2:
PF0119514=Pept_tRNA_hydro=PD(0.9=1.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAACTGGACAAGCCGTTGG
R:
AGCTCACTGTCTTCTCTGCCT
Band lengths:
132-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: