DreEX6014244 @ danRer10
Exon Skipping
Gene
ENSDARG00000098206 | ptrh1
Description
peptidyl-tRNA hydrolase 1 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050306-33]
Coordinates
chr5:64402213-64403990:+
Coord C1 exon
chr5:64402213-64402312
Coord A exon
chr5:64402400-64402445
Coord C2 exon
chr5:64402832-64403990
Length
46 bp
Sequences
Splice sites
3' ss Seq
CATGTTTCTCATCCTCTCAGGGG
3' ss Score
9.9
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
CCAGCAGATATTTAATTCAGCCCGAACATATTCTCTTGATTCACGATGAGCTTGACAAACCGCTTGGGAAGTTTGGCATCAAACATGGTGGAAGTGCAAG
Seq A exon
GGGTCACAATGGTGTTAGGTCATGCGTGGACTGCCTACAGACTGAT
Seq C2 exon
GTGATGCCGCGGTTGCGCATTGGCATTGGCCGACCGTCGGATAAAACGCCCATCGACCGCTATGTTTTGGGACGATTTTCAAAAGAGGAACAAAACGTTTTAGACTCCGTCATAAAGCAGAGTTTAGATGTGCTTCTGGATTATCTGACGGACTCGCGATCCCAGACTTCCCCAGCAGAGGGCAGGAGAGCAGCACAAAAGAAAAAAGCCAGGACACTTTCACCGCCTCAAAACAGCTCAGAAGAGCAAACGCAAAGCTGAGCTACTGACGCTGCACGTCGAGTGTTTGATGACTGAGTACTGGCATGTTTACAGTCAGGCAGAACAAAACCATTTCTGATAACTTTGTTAGGATCCACTGCACTTGCCGTATTGTAATGTTCAAGCGATAGTTCATCCAAAAATGAACCATTTATTTGTTTCAAACCTTCACGAGTTTCTTTGAACACAAAAGGAGATACTTTGAAGAAAGTTGGAACTTCCATAGTTAAAGGTATTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098206-'8-6,'8-5,9-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.169 A=0.062 C2=0.477
Domain overlap (PFAM):
C1:
PF0119514=Pept_tRNA_hydro=PD(21.9=91.3)
A:
PF0119514=Pept_tRNA_hydro=FE(8.2=100)
C2:
PF0119514=Pept_tRNA_hydro=PD(31.9=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATGAGCTTGACAAACCGCT
R:
TCGTCCCAAAACATAGCGGTC
Band lengths:
132-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]