HsaEX0051251 @ hg38
Exon Skipping
Gene
ENSG00000187024 | PTRH1
Description
peptidyl-tRNA hydrolase 1 homolog [Source:HGNC Symbol;Acc:HGNC:27039]
Coordinates
chr9:127713493-127714702:-
Coord C1 exon
chr9:127714603-127714702
Coord A exon
chr9:127714379-127714424
Coord C2 exon
chr9:127713493-127714282
Length
46 bp
Sequences
Splice sites
3' ss Seq
CCCTCCCATATCCCTTGAAGGGG
3' ss Score
6.16
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
CGGAGCTGTTTGGGCTGACTGCCGAGGAAGTCTACCTGGTGCATGATGAGCTGGACAAGCCCCTGGGGAGACTGGCTCTGAAGCTGGGGGGCAGTGCCAG
Seq A exon
GGGCCACAATGGAGTCCGTTCCTGCATTAGCTGCCTCAACTCCAAT
Seq C2 exon
GCAATGCCAAGGCTGCGGGTGGGTATCGGGCGCCCGGCGCACCCTGAGGCGGTTCAGGCCCATGTGCTGGGCTGCTTCTCCCCTGCTGAGCAGGAGCTGCTGCCTCTGTTGCTGGATCGAGCCACCGACCTGATCTTGGACCACATCCGTGAGCGAAGCCAGGGGCCCTCACTGGGGCCGTGACACTAGTGGCCATGGCTGCCTGCCTGACTGTAGTGCCCACCAACCCAGCCACTGCCACAGAGCTGCCACGCCAGCCTTGGTATCTACTTTTTATACAAATCTCCTCTAGACTGTTCCAGGCTGCCTGCGGATTAAAGTGGGGGTGACTGTGACTGGACCAGTCCATTTCTGGAGTAGGTTCTTCTCTCTGTGTCCTACTTGGGACGTAGGGGAACTTCAGGAAGACTAAACTTTTCAAGCCTTTTTAGAGAACCAGGGGCACGCATCTGTAAGATTAAAGATGCTGGCTTGGAGGCCGGGTGCAGTGGCTCACACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187024-'8-15,'8-14,9-15
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.034
Domain overlap (PFAM):
C1:
PF0119514=Pept_tRNA_hydro=FE(18.5=100)
A:
PF0119514=Pept_tRNA_hydro=PD(10.8=56.2)
C2:
PF0119514=Pept_tRNA_hydro=PD(13.6=37.8)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCATGATGAGCTGGACAA
R:
GAGAAGCAGCCCAGCACATG
Band lengths:
143-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development