Special

HsaINT0135220 @ hg38

Intron Retention

Gene
Description
peptidyl-tRNA hydrolase 1 homolog [Source:HGNC Symbol;Acc:HGNC:27039]
Coordinates
chr9:127713510-127714424:-
Coord C1 exon
chr9:127714379-127714424
Coord A exon
chr9:127714283-127714378
Coord C2 exon
chr9:127713510-127714282
Length
96 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
CCTCTCTGGCTCTCCCACAGGCA
3' ss Score
10.51
Exon sequences
Seq C1 exon
GGGCCACAATGGAGTCCGTTCCTGCATTAGCTGCCTCAACTCCAAT
Seq A exon
GTGAGTCTACCCTTTTGTTGTGCAACTGGGTCGGGTGGGCCAGGGGTCCCCCAGCACCTCGCCAAAGCTTCCTGGGCCTCTCTGGCTCTCCCACAG
Seq C2 exon
GCAATGCCAAGGCTGCGGGTGGGTATCGGGCGCCCGGCGCACCCTGAGGCGGTTCAGGCCCATGTGCTGGGCTGCTTCTCCCCTGCTGAGCAGGAGCTGCTGCCTCTGTTGCTGGATCGAGCCACCGACCTGATCTTGGACCACATCCGTGAGCGAAGCCAGGGGCCCTCACTGGGGCCGTGACACTAGTGGCCATGGCTGCCTGCCTGACTGTAGTGCCCACCAACCCAGCCACTGCCACAGAGCTGCCACGCCAGCCTTGGTATCTACTTTTTATACAAATCTCCTCTAGACTGTTCCAGGCTGCCTGCGGATTAAAGTGGGGGTGACTGTGACTGGACCAGTCCATTTCTGGAGTAGGTTCTTCTCTCTGTGTCCTACTTGGGACGTAGGGGAACTTCAGGAAGACTAAACTTTTCAAGCCTTTTTAGAGAACCAGGGGCACGCATCTGTAAGATTAAAGATGCTGGCTTGGAGGCCGGGTGCAGTGGCTCACACCTATAATCCCAGCACTTTGGGAGGCCGAGGCTGGGGGATTGCTTGACGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAAGTAGCCAGGCATGGTGGTGCATGCCTGTAATCCCTGCTACTTGGGAGACTGAGGCAGGAGAATCACTTGAACCTGGGAGGCGGAGGTTGCTGTGAGCTGAGATTGTGGCACTGCACTCCAGTCTGGGTGACAGAGTGAGACTCTGTCTCAAAAAAAAAAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187024:ENST00000419060:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact

Alternative protein isoforms

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.061
Domain overlap (PFAM):

C1:
PF0119514=Pept_tRNA_hydro=PD(10.8=56.2)
A:
NA
C2:
PF0119514=Pept_tRNA_hydro=PD(30.3=88.5)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
LOW PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTCCGTTCCTGCATTAGC
R:
TGGTCCAAGATCAGGTCGGTG
Band lengths:
179-275
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains
  • Pre-implantation embryo development