HsaALTA0006865-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000187024 | PTRH1
Description
peptidyl-tRNA hydrolase 1 homolog [Source:HGNC Symbol;Acc:HGNC:27039]
Coordinates
chr9:127714068-127714424:-
Coord C1 exon
chr9:127714379-127714424
Coord A exon
chr9:127714190-127714282
Coord C2 exon
chr9:127714068-127714189
Length
93 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
CCTCTCTGGCTCTCCCACAGGCA
3' ss Score
10.51
Exon sequences
Seq C1 exon
GGGCCACAATGGAGTCCGTTCCTGCATTAGCTGCCTCAACTCCAAT
Seq A exon
GCAATGCCAAGGCTGCGGGTGGGTATCGGGCGCCCGGCGCACCCTGAGGCGGTTCAGGCCCATGTGCTGGGCTGCTTCTCCCCTGCTGAGCAG
Seq C2 exon
GAGCTGCTGCCTCTGTTGCTGGATCGAGCCACCGACCTGATCTTGGACCACATCCGTGAGCGAAGCCAGGGGCCCTCACTGGGGCCGTGACACTAGTGGCCATGGCTGCCTGCCTGACTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187024-9-16,9-15-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.063
Domain overlap (PFAM):
C1:
PF0119514=Pept_tRNA_hydro=PD(10.8=56.2)
A:
NA
C2:
PF0119514=Pept_tRNA_hydro=PD(4.7=19.4)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCACAATGGAGTCCGTTC
R:
TACAGTCAGGCAGGCAGC
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development