HsaEX0051252 @ hg38
Exon Skipping
Gene
ENSG00000187024 | PTRH1
Description
peptidyl-tRNA hydrolase 1 homolog [Source:HGNC Symbol;Acc:HGNC:27039]
Coordinates
chr9:127694927-127716959:-
Coord C1 exon
chr9:127715544-127716959
Coord A exon
chr9:127714975-127715194
Coord C2 exon
chr9:127694927-127695141
Length
220 bp
Sequences
Splice sites
3' ss Seq
TTCCCTGGTGCCGCCCGCAGGTG
3' ss Score
11.02
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CTCTGGCCACGCCCCCGGGAACCAAGCTTTTTGAGCCGGAGGGAGGTAGAAAACTTTTATTAGCTGGAGAGGTTGAGGCCTACAGCGGGGAAAGGACTTGCCAGATTTTCGCCGCAAGTCAGGGCCATAGCGGGGGGCATAACAAGGCCTCCCAACCGAAGGTCAAGCAAGAGCTCCGAGCGTCCCACACAAGTCCCGAAGGGACACTGTGACGCCGCGCTACTGAAGGCGCCTGGGTTCCCGGACTCGGCCACCGCCTCGCCGCTTCCGCCCCTCAGAAGCATGGCGGCCACGTAGCCCGGCCCGGATTGGACGTTGGCGGTGGACGCCAAACAGTTGGCAACACGATTGGCTGCTGCGGGGTGATGACGTCAGGGGGCGGTGTCGGAGTGAATGGGGGCAGCATGAGGCCGGGCGGCTTTTTGGGCGCCGGACAGCGGCTGAGTAGAGCCATGAGCCGATGTGTTTTGGAGCCTCGCCCCCCGGGGAAGCGGTGGATG
Seq A exon
GTGGCTGGCCTGGGGAATCCCGGACTGCCCGGCACGCGACACAGCGTGGGCATGGCGGTGCTGGGGCAGCTGGCGCGGCGGCTGGGTGTGGCGGAGAGTTGGACGCGCGACCGGCACTGTGCCGCCGACCTCGCCCTGGCCCCGCTGGGGGATGCCCAACTGGTCCTGCTCCGGCCACGGCGGCTTATGAACGCCAACGGGCGCAGCGTGGCCCGGGCTG
Seq C2 exon
GCTTGGCTTGGACTCATCGTCAACAGCAGCAGCATCATCATCATCACCATCATCATCATCATCATCATCATCATCATCATCATCATCAATGGCTGAGCCCTCACTGTGCTTCCTGGGAGCCGGGCTCAGCTTCCCGCCTCCACGGGCACTACAGGAGGGAACAAAGTCACCTGTCAGGATCATGTGGAAAGAGGCCAAGGGTGGATTTAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187024_MULTIEX1-1/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.119 A=0.076 C2=NA
Domain overlap (PFAM):
C1:
PF0119514=Pept_tRNA_hydro=PU(0.1=0.0)
A:
PF0119514=Pept_tRNA_hydro=PU(88.0=98.6)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAATGGGGGCAGCATGAG
R:
TGGCCTCTTTCCACATGATCC
Band lengths:
308-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development