DreEX6014245 @ danRer10
Exon Skipping
Gene
ENSDARG00000098206 | ptrh1
Description
peptidyl-tRNA hydrolase 1 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050306-33]
Coordinates
chr5:64398037-64402312:+
Coord C1 exon
chr5:64398037-64398294
Coord A exon
chr5:64400254-64400473
Coord C2 exon
chr5:64402213-64402312
Length
220 bp
Sequences
Splice sites
3' ss Seq
TCCCATTGTTTGTGTTTCAGGTT
3' ss Score
11.64
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTCCATTCGACATGTGTCTGATGAAAGTCTCTTCGAAACTGTGTAACACACCGGTGTCTTCAACTTTAACCTTCATGATTCATAATGAGTAACACGATAGTGAAAAGCAAAGCCTGGGCTTTTGTGACACAAGTTTTTAATCTGCCTATGGCTCTTCTTCGGCGGATGATAACAAACCTGCTTAATCGAGTGATGATGATGAGCTCGCTCCCGCCACCCAAGATGGACAGTCAAGTTGATTGTAAGAAAAGGAAAATG
Seq A exon
GTTGTTGGCCTGGGAAACCCTGGCATGACTGGCTCTCGACACAGTGTTGGTATGGCTGTTCTCACAACGTTAGCTGAACGCTTGGGTGCGCCAGATGGCTGGAGATCTGACCGAAAAGTGTCAGGAGAGGTCGTTGTAACACAACTGCAGGACGTTCAGCTGGTTCTTCTTCGACCCAAATTACTGATGAACGTCAATGGCGTGAGTGTGGCAAAAGCAG
Seq C2 exon
CCAGCAGATATTTAATTCAGCCCGAACATATTCTCTTGATTCACGATGAGCTTGACAAACCGCTTGGGAAGTTTGGCATCAAACATGGTGGAAGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098206-'3-3,'3-1,6-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=0.020 C2=0.169
Domain overlap (PFAM):
C1:
PF0119514=Pept_tRNA_hydro=PU(0.1=0.0)
A:
PF0119514=Pept_tRNA_hydro=FE(76.0=100)
C2:
PF0119514=Pept_tRNA_hydro=PD(21.9=91.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACCGGTGTCTTCAACTTT
R:
TGATGCCAAACTTCCCAAGCG
Band lengths:
293-513
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]