MmuEX6100624 @ mm9
Exon Skipping
Gene
ENSMUSG00000053746 | Ptrh1
Description
peptidyl-tRNA hydrolase 1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1913779]
Coordinates
chr2:32631306-32632326:+
Coord C1 exon
chr2:32631306-32631415
Coord A exon
chr2:32631824-32632043
Coord C2 exon
chr2:32632227-32632326
Length
220 bp
Sequences
Splice sites
3' ss Seq
TGAGTGAGTGTTGCCTACAGGTG
3' ss Score
5.55
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GAATGGGAGTCGGCACGTTGAAGTCCGGTCTTTTTAGTCCAGGGATGCGGCGGAGTTGGGCCTTGAGCCGGCAGGTTTCCGAGGCTCGGTTCCCCGGGAAGCGGTGGCTG
Seq A exon
GTGGCTGGCCTGGGGAACCACGGAATGCCCGGCACCCGGCACAGTGTGGGCATGGCGGTGCTGGGGCAAATAGCAAGGCGACTGGGAGTGGCGGAGAATTGGACTCGTGACTCGCGCTGTGCTGCTGACCTCGCCCTGGCCCCGCTCGGGGATGCTCAGCTGGTACTGCTCCGGCCGCGGCGCCTCATGAACGTCAACGGGCGCAGCGTAGCCCGAGCTG
Seq C2 exon
CGGAGCTGTTTGGGCTGACTGCGGAGGAGATCTATCTGGTCCATGATGAACTGGACAAGCCGTTGGGAAAGCTGGCTCTGAAGCTGGGGGGCAGCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053746-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0119514=Pept_tRNA_hydro=PU(0.1=0.0)
A:
PF0119514=Pept_tRNA_hydro=FE(40.8=100)
C2:
PF0119514=Pept_tRNA_hydro=FE(18.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACGTTGAAGTCCGGTCTTT
R:
TTCAGAGCCAGCTTTCCCAAC
Band lengths:
180-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: