RnoEX6016487 @ rn6
Exon Skipping
Gene
ENSRNOG00000049034 | Ptrh1
Description
peptidyl-tRNA hydrolase 1 homolog [Source:RGD Symbol;Acc:1310165]
Coordinates
chr3:11811962-11812972:+
Coord C1 exon
chr3:11811962-11812066
Coord A exon
chr3:11812458-11812677
Coord C2 exon
chr3:11812873-11812972
Length
220 bp
Sequences
Splice sites
3' ss Seq
TGTGTGAATATTGCCCACAGGTG
3' ss Score
8.67
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GGGGTCCGCATGTTGAAGTCCGGCCTTTTTTGCCCTGGGATGCGGCGGAGTTGGACCTTGAGCCGGCAGGTTTCTGAGGCTCGGTTCCCCGGGAAGCGGTGGCTG
Seq A exon
GTGGCTGGCCTGGGGAACCCCGGAATGCCTGGCACTCGGCACAGCGTAGGCATGGCAGTGCTGGGGCAAATAGCACAGCGACTGGGAGTGGCAGAGAACTGGGCTCGTGACTCGCGCTGCGCTGCTGACCTCGCCCTGGCCCCATTCGGGGATGCTCAGCTGGTACTGCTCCGGCCAAGGCGCCTCATGAACGTCAACGGGCGCAGCGTAGCCAAAGCTG
Seq C2 exon
CGGAGCTGTTTGGGCTGAGTGCGGAGGAGATCTACCTGGTGCATGACGAACTGGACAAACCCTTGGGAAAGCTGGCTCTGAAGCTGGGGGGCAGCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049034-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.002 C2=0.000
Domain overlap (PFAM):
C1:
PF0119514=Pept_tRNA_hydro=PU(0.1=0.0)
A:
PF0119514=Pept_tRNA_hydro=FE(40.8=100)
C2:
PF0119514=Pept_tRNA_hydro=FE(18.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGTCCGCATGTTGAAGTC
R:
CTTCAGAGCCAGCTTTCCCAA
Band lengths:
188-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]