HsaEX0051252 @ hg19
Exon Skipping
Gene
ENSG00000187024 | PTRH1
Description
peptidyl-tRNA hydrolase 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:27039]
Coordinates
chr9:130457206-130479238:-
Coord C1 exon
chr9:130477823-130479238
Coord A exon
chr9:130477254-130477473
Coord C2 exon
chr9:130457206-130457420
Length
220 bp
Sequences
Splice sites
3' ss Seq
TTCCCTGGTGCCGCCCGCAGGTG
3' ss Score
11.02
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CTCTGGCCACGCCCCCGGGAACCAAGCTTTTTGAGCCGGAGGGAGGTAGAAAACTTTTATTAGCTGGAGAGGTTGAGGCCTACAGCGGGGAAAGGACTTGCCAGATTTTCGCCGCAAGTCAGGGCCATAGCGGGGGGCATAACAAGGCCTCCCAACCGAAGGTCAAGCAAGAGCTCCGAGCGTCCCACACAAGTCCCGAAGGGACACTGTGACGCCGCGCTACTGAAGGCGCCTGGGTTCCCGGACTCGGCCACCGCCTCGCCGCTTCCGCCCCTCAGAAGCATGGCGGCCACGTAGCCCGGCCCGGATTGGACGTTGGCGGTGGACGCCAAACAGTTGGCAACACGATTGGCTGCTGCGGGGTGATGACGTCAGGGGGCGGTGTCGGAGTGAATGGGGGCAGCATGAGGCCGGGCGGCTTTTTGGGCGCCGGACAGCGGCTGAGTAGAGCCATGAGCCGATGTGTTTTGGAGCCTCGCCCCCCGGGGAAGCGGTGGATG
Seq A exon
GTGGCTGGCCTGGGGAATCCCGGACTGCCCGGCACGCGACACAGCGTGGGCATGGCGGTGCTGGGGCAGCTGGCGCGGCGGCTGGGTGTGGCGGAGAGTTGGACGCGCGACCGGCACTGTGCCGCCGACCTCGCCCTGGCCCCGCTGGGGGATGCCCAACTGGTCCTGCTCCGGCCACGGCGGCTTATGAACGCCAACGGGCGCAGCGTGGCCCGGGCTG
Seq C2 exon
GCTTGGCTTGGACTCATCGTCAACAGCAGCAGCATCATCATCATCACCATCATCATCATCATCATCATCATCATCATCATCATCATCAATGGCTGAGCCCTCACTGTGCTTCCTGGGAGCCGGGCTCAGCTTCCCGCCTCCACGGGCACTACAGGAGGGAACAAAGTCACCTGTCAGGATCATGTGGAAAGAGGCCAAGGGTGGATTTAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187024_MULTIEX1-1/3=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.068 C2=NA
Domain overlap (PFAM):
C1:
PF0119514=Pept_tRNA_hydro=PU(0.1=0.0)
A:
PF0119514=Pept_tRNA_hydro=FE(58.4=100)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAATGGGGGCAGCATGAG
R:
TGGCCTCTTTCCACATGATCC
Band lengths:
308-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)